PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00303
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 189aa    MW: 22087.4 Da    PI: 9.3498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00303genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-111364555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                 + +E++RR +++s +++L +llP+  ++ s+  ls  + L +A +YIk+Lq
  AA57G00303 13 RKTIEKNRRIEMKSLYSKLNSLLPQHHHQISREsLSIPDQLDEAAKYIKKLQ 64
                5789*********************556666666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.204863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-71367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-81478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-71464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-51469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-51668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEKHTNTSQS KDRKTIEKNR RIEMKSLYSK LNSLLPQHHH QISRESLSIP DQLDEAAKYI  60
KKLQVNVEKK EERKRKLITV TNSEKFNYTS TGSSSNFDMI VPRKLPRIEI QEMGLILHVF  120
LVTSLEHKFM FQEIIHVLVE ELGVEITHAG YSNVDDTIFH TLHCKVEECN YGVNTRISER  180
LKKLVNNVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439537.19e-90PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ74e-79BH162_ARATH; Transcription factor bHLH162
TrEMBLR0F6L92e-84R0F6L9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010439537.13e-89(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-75bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]