PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00307
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 204aa    MW: 23021.2 Da    PI: 9.8596
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00307genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.73.8e-361773662
      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                + cprC+s+ntkfCyynny+++qPryfCk+CrryWt+GGa rn+PvGg++r++k+++
  AA57G00307 17 QICPRCNSDNTKFCYYNNYNVNQPRYFCKNCRRYWTHGGAQRNIPVGGSSRRRKQHK 73
                67*************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-221371IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.2391771IPR003851Zinc finger, Dof-type
PfamPF027012.6E-301871IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEMEENRGRP AARPPPQICP RCNSDNTKFC YYNNYNVNQP RYFCKNCRRY WTHGGAQRNI  60
PVGGSSRRRK QHKNTTNNNN NNNTQSSTTY ATQIQPASTS SHQFLGHYRD CSTSYSAIGT  120
QLGSLPPQQI QQDYVTAATP IRSFRAIDGV NFSNQGSYFD VGSSNLMSNP LVNQSIDETK  180
WNQSFGNAMN MEFNASGSRG SFRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.19e-46Dof-type zinc finger domain-containing protein