PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00340
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 253aa    MW: 28993.1 Da    PI: 4.32
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00340genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.00011972331455
                 HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++  +++  L++l+ +      +K + a++L  A+ YIk++q
  AA57G00340 197 EKFGDRITALQQLVSPF-----GKTDTASVLHDAIGYIKYMQ 233
                 55668899999999998.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-4173236No hitNo description
PROSITE profilePS5088810.436183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-9193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-7198237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTEEFDNAGV FTGNFWNSSI NIFSGYSLPS LTEIAFDVSD FEWQNNDVKT DNVNNLDTYA  60
FFANTNLDST SQISLSNQSK FHEEEKFNPI YSFLEGLLDS NDQYLSIFDS TKQEQLENFN  120
FFKDIFLNDS ENVSVFDLEI KTKLKEEINS NKSLITCKRV ISTENTEDIN DIESSPRLKR  180
PRLETPLQLP SFKVRKEKFG DRITALQQLV SPFGKTDTAS VLHDAIGYIK YMQEQITVSS  240
NPLMNSRGSV EQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872906.13e-98transcription factor bHLH103
SwissprotQ8VZ229e-94BH103_ARATH; Transcription factor bHLH103
TrEMBLG4WH752e-97G4WH75_ARALY; Uncharacterized protein
STRINGBostr.10689s0083.1.p1e-99(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147121418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.14e-96bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]