PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA58G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 146aa    MW: 16182.4 Da    PI: 10.1862
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA58G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.6e-184276135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C  Cgt+kTplWR gp g+k+LCnaCG+++rkk++
  AA58G00001 42 CNDCGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 76
                99******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-143688IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2153672IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-123678No hitNo description
Gene3DG3DSA:3.30.50.109.4E-154076IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.20E-124176No hitNo description
PROSITE patternPS0034404267IPR000679Zinc finger, GATA-type
PfamPF003202.2E-164276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLDHNENVFD SEDTKMKLTG GDMIEQSKSS SSSSSNGDKK TCNDCGTSKT PLWRGGPAGP  60
KSLCNACGIR NRKKRRSVIS TEDKKSKKSD LKRNSKLGDS LKQRMMELSR DVMMQRSTVE  120
KQRRKLGEEE QAAVLLMALS CASVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA58G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546999.12e-61PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG101e-60GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1J3JSN12e-59A0A1J3JSN1_NOCCA; GATA transcription factor 16
STRINGXP_010546999.17e-61(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-62GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]