PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA59G00016
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 501aa    MW: 56763.7 Da    PI: 7.4398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA59G00016genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.5e-1319674197
                TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 s r W+vk       + ++lt+GW+eF+ a++Lk+gD++vFk+++++ f  +v+v 
  AA59G00016 19 HSDRDWRVKS------EDFLLTEGWEEFAAAHNLKDGDVLVFKHERHDYF--HVSVE 67
                4446666665......99*************************9887777..77665 PP
2B362.28.4e-20131226299
                 EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f v ++s++l ++rl+l k+f++ + g++  + +++ +++e gr+W + l  +k+sg ++ ++GWk+F+ angL eg  + Fkl++ +++++++ +++k
  AA59G00016 131 FVVRVTSYSLLHDRLYLGKRFTSLFsGEN--KRREIDVQNELGRKWIMLLLLNKSSGVFYVRRGWKNFCCANGLSEGVLCKFKLVE-NGETPLLLLCSK 226
                 567899****************7775444..5569***************99********************************98.666788888886 PP
3B374.81e-23282379199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                 f++ + +++ + sg+l++pk+f++e+g+kk  s ++tl +++gr+W  +l+ ++ s++++++kGW+e++kang+ +gD+++++l+++  + ++++k+++
  AA59G00016 282 FVTFEYTPNRHLSGQLTFPKSFTSENGIKK--SGEITLLNKDGRKWAANLRRSGESEWFYMRKGWREMCKANGVMVGDSFMLELIWDnGNVTPMLKFCS 378
                 666777888889999***********9995..458***************99999999***************************999*********98 PP

                 S CS
          B3  99 k 99 
                 k
  AA59G00016 379 K 379
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0013170IPR003340B3 DNA binding domain
CDDcd100178.76E-12166No hitNo description
PROSITE profilePS5086313.028170IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-11266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-12966IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-92265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-17126226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-19129230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-16130225No hitNo description
SMARTSM010191.8E-23130227IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521130226IPR003340B3 DNA binding domain
PfamPF023622.6E-19131226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-19281379IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-26282380IPR003340B3 DNA binding domain
PfamPF023624.6E-24282379IPR003340B3 DNA binding domain
PROSITE profilePS5086314.466282379IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-18291381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-17294369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
TVPHEFVTKY KKVWLRSDHS DRDWRVKSED FLLTEGWEEF AAAHNLKDGD VLVFKHERHD  60
YFHVSVESRS DNVDAQNASC GYADIGEECT VDNGADVNAD VVDAGGGEDV GDEGNISKKK  120
DKNPEADSSC FVVRVTSYSL LHDRLYLGKR FTSLFSGENK RREIDVQNEL GRKWIMLLLL  180
NKSSGVFYVR RGWKNFCCAN GLSEGVLCKF KLVENGETPL LLLCSKESAI NRSSSGEVDD  240
EEEECHEVDA AVKIWSAGDC KEEKSISGEG FKGKEKKTPS RFVTFEYTPN RHLSGQLTFP  300
KSFTSENGIK KSGEITLLNK DGRKWAANLR RSGESEWFYM RKGWREMCKA NGVMVGDSFM  360
LELIWDNGNV TPMLKFCSKI QNPESQRKGR TLTRAAETVR QPKVETRGSK RVTREPEQQE  420
GEKIAARRSS TNQRNLQSTQ PRSCSATDQV SQVRRSIVDT LTTVKRFRFE LETREQHLEA  480
ALMEIDGLGE KISGITKRLF G
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA59G00016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412578.11e-139B3 domain-containing protein REM1
TrEMBLA0A087GIP51e-138A0A087GIP5_ARAAL; Uncharacterized protein
TrEMBLV4P3P11e-138V4P3P1_EUTSA; Uncharacterized protein
STRINGA0A087GIP51e-139(Arabis alpina)
STRINGXP_006412578.11e-138(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-139B3 family protein