PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00094
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 95aa    MW: 10980.7 Da    PI: 10.4699
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00094genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.3e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien++ rqvtfskRrng+lKKA+ELSvLCda++++i+fs++g+ly +ss
  AA5G00094  9 KKIENSTSRQVTFSKRRNGLLKKAYELSVLCDAQISLIVFSQKGRLYQFSS 59
               78***********************************************96 PP
2K-box34.67.8e-1360953368
      K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68
               +++ +l+Ge+++s+s++eLq++ +qL++sl++iR++
  AA5G00094 60 SSHEKLMGEEISSCSVQELQEIDNQLQRSLRNIRAR 95
               67899*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-30385IPR002100Transcription factor, MADS-box
CDDcd002653.45E-37366No hitNo description
PRINTSPR004042.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-312338IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.4063395IPR002487Transcription factor, K-box
PRINTSPR004042.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-105995IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MVRGKIEMKK IENSTSRQVT FSKRRNGLLK KAYELSVLCD AQISLIVFSQ KGRLYQFSSS  60
SHEKLMGEEI SSCSVQELQE IDNQLQRSLR NIRAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19166166MEF2C
5f28_B7e-19166166MEF2C
5f28_C7e-19166166MEF2C
5f28_D7e-19166166MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112008.11e-43PREDICTED: MADS-box protein AGL42-like
RefseqXP_013661108.11e-43MADS-box protein AGL42 isoform X1
SwissprotQ9FIS12e-41AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A2G9G6S41e-44A0A2G9G6S4_9LAMI; Uncharacterized protein
STRINGBra035907.1-P3e-42(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-44AGAMOUS-like 42