PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00104
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 307aa    MW: 33959 Da    PI: 6.7829
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00104genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34311222102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+++++ed++++++isw+++g+sf+v+++ +fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k+ll++i+
     AA5G00104  31 FLIKTFNLVEDHSIDDVISWNHDGSSFIVWNPIDFARDLLPKFFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFRRGEKRLLREIQ 118
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     AA5G00104 119 RRKI 122
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5227120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.43E-3328120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALPPLENCD SNAGNSDSGT GESQRSVPTP FLIKTFNLVE DHSIDDVISW NHDGSSFIVW  60
NPIDFARDLL PKFFKHNNFS SFVRQLNTYG FKKVVPDRWE FSNDFFRRGE KRLLREIQRR  120
KISTQVAAPS PEMTTAVAAQ RIPTAKPVLS PSNSDQAVSP SSLGSGGGSG GVSMELVEEN  180
EKLRKQNIEL NRELTQMKSI CDNIFNLMSN YAGGSQLDRS YSTSSSNDVI KPMEFLPAKR  240
FSCEIEEEAN PRLFGVPIGI KRTRSTGDQP AVSEASASAV AGEKSGGGVE ETPWLRNYNR  300
VNQKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211912017129Heat shock factor protein 1
5d5v_B2e-211912017129Heat shock factor protein 1
5d5v_D2e-211912017129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151322.11e-137PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-128HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM4D0Q01e-135M4D0Q0_BRARP; Uncharacterized protein
STRINGBra010049.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-119heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]