PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00135
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 288aa    MW: 32079 Da    PI: 10.1866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00135genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.2e-1197142247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W+++E+  ++++ ++lG+g+ + I++ + ++Rt+ q+ s+ qky
        AA5G00135  97 NPWSEDEHRTFLRGLNKLGKGDRRGISKNFVTTRTPTQVASHAQKY 142
                      69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.29891147IPR017930Myb domain
SuperFamilySSF466892.45E-1592147IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-1594145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.2E-895142IPR009057Homeodomain-like
SMARTSM007178.8E-795145IPR001005SANT/Myb domain
PfamPF002497.4E-897142IPR001005SANT/Myb domain
CDDcd001673.30E-698142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVKETVTATE TACEHINQNS GTCLNAVNEK CVKLFGVNIA SNVSVTPPLR KCISLDNLPS  60
HLNNGDIIVG DDDSGYLSDG QLNSKKRKTT HQKKKGNPWS EDEHRTFLRG LNKLGKGDRR  120
GISKNFVTTR TPTQVASHAQ KYYQRLNDNN KRRRSSLFDL SIDSQETSKP LSKGESSNTV  180
SNQQLTGSQN RVQEQTGNLN RFQNLTREFM PIPQIVPNYN NTQTRMLNPV YYLNPVPLRV  240
VHPSGIPKPV NRLNEDGLEL RIGLATSPSP PHQTGATDLS SHGFIHVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678253.12e-97probable transcription factor At5g61620
RefseqXP_022567557.12e-97probable transcription factor At5g61620
SwissprotQ9FKF91e-97M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A078JNX73e-96A0A078JNX7_BRANA; BnaCnng59200D protein
STRINGBostr.26833s0072.1.p4e-98(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-92MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]