PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA5G00148

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 331aa MW: 37972 Da PI: 8.5456

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA5G00148	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.3	2.5e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp +k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lv AA5G00148 16 LPPGFRFHPTDEELISHYLHKKVLDINFSA-KAIGEVDLNKSEPWELPWIAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLV 113 79************************99.88***********7778899***********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfy+grapkg+kt+Wvmheyrl AA5G00148 114 GMKKTLVFYRGRAPKGQKTNWVMHEYRL 141 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.909	16	166	IPR003441	NAC domain
Pfam	PF02365	7.4E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
METFCGFHKE EEQMDLPPGF RFHPTDEELI SHYLHKKVLD INFSAKAIGE VDLNKSEPWE 60 LPWIAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LDGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKISISNLIR 180 IGPFGTDFTS SVLPPLTDSS IYNNKTKHEP VYVPCFSNQT NQVQGTTLNC FTTPCLNSIQ 240 SNIFQRISPY QASETLQNSI HPQEHSVLQA MIENNRKQNL KTLSISQETG VSTDMNTDIS 300 SDFEFGKKRF DPQEDPSSSV GPVDLEPFWN Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	4e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	5e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	5e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA5G00148

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871917.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	D7MV19	0.0	D7MV19_ARALL; ANAC100/ATNAC5
STRING	fgenesh2_kg.8__2118__AT5G61430.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]