PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA5G00195

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 509aa MW: 56812.4 Da PI: 6.5802

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA5G00195	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.6	1.9e-17	288	337	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq AA5G00195 288 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 337 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.2E-22	283	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-18	284	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	286	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-15	288	340	No hit	No description
Pfam	PF00010	5.0E-15	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-13	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MELPQPRPFE AEGRKPIHDF LSACSNSTTI QPDPKPPSQS QGGNLKTHDF LQPLERVGRG 60 CIGTSNNVDI SMASMKSSSP ASTSTLTPSS VQDQHVLPGG IGTYTISHIP YFYHQRLPKP 120 EVSSSSPMFN VAQTSGNNER NVADENSNSN SNGSCSYAAN GFTLWDESTG KKGQIMKERT 180 NIRVDAATVI GQWQGLERLS QSSTNHHRNS FSSRSSSQGS GLKSQSFMDM IRSAKGSSQD 240 DDLDDDEEDF IMKKENTSTS TQSQSQRDLR VKVDGKGSCN DQKPNTPRSK HSATEQRRRS 300 KINDRFQMLR QLIPNSDQKR DKASFLLEVI EYIHFLQERV NKNEVPYQGW NHQEQGKLTN 360 WKNDQQTGDE NVDFAPKLED KNNSQSIAIE TSSFHEAAEP NQTSLMCPVS SDVEEVEEEE 420 EEVCVHRGTI SISSVVYSQG LLKTLTETLQ TSGVDLSKAS ISVQIQLSKQ PKKDQEVHRT 480 VRARSDDDYI DDNNSSSKQQ TKKQKKLKK

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MELPQPRPFE AEGRKPIHDF LSACSNSTTI QPDPKPPSQS QGGNLKTHDF LQPLERVGRG  60
CIGTSNNVDI SMASMKSSSP ASTSTLTPSS VQDQHVLPGG IGTYTISHIP YFYHQRLPKP  120
EVSSSSPMFN VAQTSGNNER NVADENSNSN SNGSCSYAAN GFTLWDESTG KKGQIMKERT  180
NIRVDAATVI GQWQGLERLS QSSTNHHRNS FSSRSSSQGS GLKSQSFMDM IRSAKGSSQD  240
DDLDDDEEDF IMKKENTSTS TQSQSQRDLR VKVDGKGSCN DQKPNTPRSK HSATEQRRRS  300
KINDRFQMLR QLIPNSDQKR DKASFLLEVI EYIHFLQERV NKNEVPYQGW NHQEQGKLTN  360
WKNDQQTGDE NVDFAPKLED KNNSQSIAIE TSSFHEAAEP NQTSLMCPVS SDVEEVEEEE  420
EEVCVHRGTI SISSVVYSQG LLKTLTETLQ TSGVDLSKAS ISVQIQLSKQ PKKDQEVHRT  480
VRARSDDDYI DDNNSSSKQQ TKKQKKLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA5G00195

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024011999.1	1e-167	transcription factor BIM1 isoform X2
Swissprot	Q9LEZ3	1e-153	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A1J3K7U2	1e-165	A0A1J3K7U2_NOCCA; Transcription factor BIM1
STRING	XP_006399300.1	1e-164	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-130	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]