PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00203
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YB
Protein Properties Length: 159aa    MW: 17954.1 Da    PI: 4.2901
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00203genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.41.8e-2311102392
      NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyre 92 
                ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+++ti+++ +l al  lGf +y e++ + y  +ky  
  AA5G00203  11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYNEEVYAaYeQHKYET 102
                6899*************************************************************************999864141344544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-398139IPR009072Histone-fold
SuperFamilySSF471131.54E-3512142IPR009072Histone-fold
PfamPF008085.4E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNKEDKRTI APEHVLKALQ VLGFGEYNEE VYAAYEQHKY ETMQDTQRSV KWNTGAEMTE  120
EEAAAEQQRM FAEARARMNG GVPVPQPENQ ETDQNSLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-331213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00203
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174601e-166AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17.
GenBankATHDR1B1e-166D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds.
GenBankAY0577091e-166AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
GenBankAY1169601e-166AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394577.11e-111protein Dr1 homolog isoform X1
SwissprotP495921e-109NC2B_ARATH; Protein Dr1 homolog
TrEMBLV4KWV81e-109V4KWV8_EUTSA; Uncharacterized protein
STRINGXP_006394577.11e-110(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-91nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]