PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA60G00005

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 119aa MW: 13593.8 Da PI: 8.8351

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA60G00005	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.7	1.6e-37	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC+++pyfp ++p+kfa++hk++Ga nv+k+l++lp ++r++a++s+ +eAe+r +dPvyG+vg+i+ lq +++q+++ la++++ AA60G00005 7 RCAACKYLRRRCPQDCIFSPYFPPNSPEKFACIHKIYGAGNVSKMLHQLPVQTRSEAVESMWFEAECRRDDPVYGVVGIIHLLQIHIQQTQNLLAKTQA 105 6********************************************************************************************999998 PP DUF260 100 e 100 e AA60G00005 106 E 106 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.545	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-36	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MMNPTKRCAA CKYLRRRCPQ DCIFSPYFPP NSPEKFACIH KIYGAGNVSK MLHQLPVQTR 60 SEAVESMWFE AECRRDDPVY GVVGIIHLLQ IHIQQTQNLL AKTQAEIAAS RSNIVKPDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-34	8	107	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-34	8	107	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA60G00005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_189300.1	1e-61	LOB domain-containing protein 24
Swissprot	P59468	9e-63	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A291LR10	3e-60	A0A291LR10_BRARR; Transcription factor LBD23
STRING	Bostr.0556s0333.1.p	1e-61	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-54	LOB domain-containing protein 24