PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00030
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 128aa    MW: 14723 Da    PI: 10.4352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00030genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000584769123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ Fs+   L  H  +H
  AA60G00030 47 FECKTCNRKFSSFQALGGHRASH 69
                89**********99999998887 PP
2zf-C2H216.81.9e-0590112123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg++F +   L  H+r+H
  AA60G00030  90 HQCSICGQRFGTGQALGGHMRRH 112
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.7E-114771IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3254774IPR007087Zinc finger, C2H2
SMARTSM003550.194769IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.12E-847112No hitNo description
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00185113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.4E-1190113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78590117IPR007087Zinc finger, C2H2
SMARTSM003550.00690112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MKRERSDFED SIKNLDIAKC LMILSKNSMV KYMDVNQYTK KITNQEFECK TCNRKFSSFQ  60
ALGGHRASHK RPKLSNETKQ VRNVSNNEMH QCSICGQRFG TGQALGGHMR RHRTSTMVES  120
PLLPVMPI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437483.15e-63PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD45e-61ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4NZG85e-61V4NZG8_EUTSA; Uncharacterized protein
STRINGBostr.23794s0343.1.p6e-62(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-63C2H2 family protein