PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA60G00072

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NF-YB

Protein Properties

Length: 169aa MW: 18519.7 Da PI: 8.4647

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA60G00072	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.5	5.3e-55	32	126	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimk+ lP n+ki+kdak+tvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfe y+eplk+yl++yre ++ AA60G00072 32 VREQDRFLPIANISRIMKRGLPPNGKIAKDAKDTVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFESYIEPLKIYLMRYREGDT 126 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-52	28	148	IPR009072	Histone-fold
SuperFamily	SSF47113	8.23E-39	35	138	IPR009072	Histone-fold
Pfam	PF00808	1.4E-27	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.6E-21	66	84	No hit	No description
PROSITE pattern	PS00685	0	69	85	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.6E-21	85	103	No hit	No description
PRINTS	PR00615	2.6E-21	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAESQNKSSG MSPGACGSHE SGGDQSPKSS QVREQDRFLP IANISRIMKR GLPPNGKIAK 60 DAKDTVQECV SEFISFVTSE ASDKCQREKR KTINGDDLLW AMATLGFESY IEPLKIYLMR 120 YREGDTKGSA KGGDMNAKKD VQSSQNGQFS QLAHQGSFSQ DPYGNSQIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	3e-47	33	123	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	3e-47	33	123	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA60G00072

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353083	1e-135	AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410886.1	1e-103	nuclear transcription factor Y subunit B-8
Swissprot	Q8VYK4	2e-99	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	E4MX36	1e-102	E4MX36_EUTHA; mRNA, clone: RTFL01-13-K14
TrEMBL	V4M7P8	1e-102	V4M7P8_EUTSA; Uncharacterized protein
STRING	Bostr.23794s0383.1.p	1e-105	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-102	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]