PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA60G00085

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

TCP

Protein Properties

Length: 201aa MW: 22147.9 Da PI: 10.0028

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA60G00085	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109	6.9e-34	40	142	7	105
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg......kaaksaaks 97 ++++hTkv+gR RRvR++a+ aar+F+L++eLG+ +d++tieWLl+qa+++i+ +tg+++++++ + +s +++s+s ++ + +++ AA60G00085 40 VSKDRHTKVNGRSRRVRMPALAAARIFQLTRELGHRSDGETIEWLLRQAEASIITATGSGTNPSEPIstSIGSATVNSSKSAEPmmyamvA----PQNQ 134 589********************************************************99999555432222222222222224533331....3222 PP TCP 98 kksqksaa 105 +sq +++ AA60G00085 135 AQSQLQTQ 142 22222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-29	40	140	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.615	41	95	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAIHKFSPTD SNLNTIPPES HPQTQISVAR KSSGRRVSAV SKDRHTKVNG RSRRVRMPAL 60 AAARIFQLTR ELGHRSDGET IEWLLRQAEA SIITATGSGT NPSEPISTSI GSATVNSSKS 120 AEPMMYAMVA PQNQAQSQLQ TQEQLSHSLP ICQLDLSQSI GIHYPVNGYS HMPFTALLLQ 180 PMTTAETESE ALEDRRRRHH N

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA60G00085

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410877.2	1e-74	transcription factor TCP11
Swissprot	Q9SJK7	7e-53	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1J3JRI9	1e-77	A0A1J3JRI9_NOCCA; Transcription factor TCP11
STRING	XP_006410877.1	5e-74	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	1e-52	TCP family protein