PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00095
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 734aa    MW: 81697.3 Da    PI: 6.3118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00095genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-083274347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
       AA60G00095 32 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 74
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-102479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-52777IPR009057Homeodomain-like
PROSITE profilePS5129313.522879IPR017884SANT domain
SMARTSM007175.1E-62977IPR001005SANT/Myb domain
PfamPF002493.1E-63274IPR001005SANT/Myb domain
CDDcd001671.56E-53275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MLNENGNPNI ASSAPVSVVQ YPAKKPTRQW AAWTHQEEES FFTALRQVGK NFEKITSRVQ  60
SKNKDQVRHY YYRLVRRMNK LLGPELSLDA KNPKDTNAAM LRWWSLLEKY SCKASKLHLK  120
PRRFKLFIEA LEHQLLKDRR KNIRKRTFQG ETFSSASLGN ISSVTRERGL ENRPFKLILC  180
DGQNGKKLGP GRSSTKIGES LVVSLGDEKE DTSFGKGGRQ RRRQVGYRKW EKAAIDGVSL  240
VADAAEHLER TSIDKDMDIQ KGTTRHSTGK PPLSLCSSGD IPLSDTNMQY AGKLKLQLFP  300
IDETTRRSLE MDKHNPHLEL TLSNRKKISS VLEHLNRKWG SSSCASGELM LFPYNARKET  360
VTCHQRWTHD SFLSAAEVHS MVGSPSVFRL RYGWFVDGEL GSFIPQSHTS VSGPLHENDM  420
NEDESNELNE VHMLLAESEP LPAHSTAEQA PYVEPNQGLV GPSGEIDDHC AESRDNFEPN  480
SPWNRKESGN STRQFGNSDG LQLSSSNVIS AGEWADSLTN ISIGDLLSEV PDDIDSDCVD  540
RPISLGSHCL LRDLPFASDS FDAAIAAHIL RHQNKSSALL PLTSGSSSLW DDEETRDAFS  600
FERHRLSDSP KLPKVASPKV VGEVNGEPSQ LVEVLSEAEG ACNPPDHGDP MEEEPSSSHL  660
MDSPGKIHCG LADVYWPDSL GPLDLDIRSS KYTEDLILSE SLGGLSRLIA TSLDAFQNCS  720
LFGFDNKKDQ SNMV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884578.10.0TSL-kinase interacting protein 1 isoform X1
RefseqXP_024003914.10.0TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
TrEMBLV4LP170.0V4LP17_EUTSA; Uncharacterized protein
STRINGscaffold_402323.10.0(Arabidopsis lyrata)
STRINGXP_006410872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1