PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00097
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 108aa    MW: 12488.7 Da    PI: 10.7185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00097genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0014872123
                EEETTTTEEESSHHHHHHHHHH..T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                + C +C++ Fs+ s  + H++t  H
  AA60G00097 48 FYCLHCDRYFSNASVRNDHLKTkkH 72
                78******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-193498No hitNo description
SMARTSM004517.9E-114579IPR003604Zinc finger, U1-type
PfamPF121713.9E-104773IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGRCPTRKVK KRRLSHKTAR RDKFELRKPE KEIKPLQLDE DLPGMGQFYC LHCDRYFSNA  60
SVRNDHLKTK KHKKRVKIMM GEAPHSQLDA DLAAGMGKPD NGPKLMAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613RKVKKRRL
21128RRLSHKTARRDKFELRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00097
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565854.15e-64zinc finger (C2H2 type) family protein
TrEMBLA0A178VR315e-64A0A178VR31_ARATH; Uncharacterized protein
STRINGAT2G36930.12e-63(Arabidopsis thaliana)