PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00132
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 143aa    MW: 17119.8 Da    PI: 9.309
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00132genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1857111357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 k+ t+t+ q++ Le+ Fe++ +++ +++ +LAk+lgL  rqV +WFqN++a++kk
  AA60G00132  57 KKKTITNLQVKFLERSFEEEIKLDPKRKMKLAKELGLHPRQVAIWFQNKKARWKK 111
                 7889**************************************************8 PP
2HD-ZIP_I/II107.78.8e-3556139184
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                  ekk+ +++ qvk+LE+sFeee kL+p+rK++la+eLgl+prqva+WFqn++AR+k+kq+E  ye+L++++d + +e+erL++ev
   AA60G00132  56 EKKKTITNLQVKFLERSFEEEIKLDPKRKMKLAKELGLHPRQVAIWFQNKKARWKKKQVEYLYESLRQEFDVVCKEKERLQQEV 139
                  69*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.31E-1948114IPR009057Homeodomain-like
PROSITE profilePS5007116.69852112IPR001356Homeobox domain
SMARTSM003896.4E-1755116IPR001356Homeobox domain
CDDcd000866.66E-1457113No hitNo description
PfamPF000465.6E-1657111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1962112IPR009057Homeodomain-like
PRINTSPR000311.7E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.7E-592108IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEYYDNSFFN GDPIFPFNNY PIFSAAAMVK KQQQICVPQA IDKSMVGDEV NINGQEKKKT  60
ITNLQVKFLE RSFEEEIKLD PKRKMKLAKE LGLHPRQVAI WFQNKKARWK KKQVEYLYES  120
LRQEFDVVCK EKERLQQEVY FID
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295077.17e-48homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR72e-46ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLR0HRP82e-46R0HRP8_9BRAS; Uncharacterized protein
STRINGXP_006295077.13e-47(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.17e-49homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]