PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA60G00152

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

GRF

Protein Properties

Length: 379aa MW: 42168.6 Da PI: 7.8867

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA60G00152	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.5	7.6e-26	138	181	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e AA60G00152 138 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 181 79***************************************987 PP
2	QLQ	53.7	6.2e-19	69	105	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k AA60G00152 69 SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKK 105 67*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.3E-12	69	105	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.247	70	105	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.5E-13	71	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.54	138	182	IPR014977	WRC domain
Pfam	PF08879	8.9E-22	139	181	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MDLQLKQWRN QTESEEQQPS AAKIPKHVFD QIQSQAALPL FAPEPNSSKL SSLSGLSPDS 60 SSRFPKMGSF FSWAQWQELE LQALIYRYML AGAAVPQELL LPIKKSLLHL SPSYFLHHPL 120 QHLPHYQPAW YLGRAAMDPE PGRCRRTDGK KWRCSRDVFA GHKYCERHMH RGRNRSRKPV 180 EIPTPTQTQT TPTPTNLNHT TNSASNQTRS SFDFGGDGVN VGDGQGSSFF FSGSSNSSSD 240 LLHLSQRDPF VKADPFMSHI FLQKMSEIMS CGFCNSCSEM KQGSNNNNKR SYETHGGFGD 300 NRSDNGHILR HFFDDWPRSS LQEADTTSSP MSSATCLSIS MPGNSSSDVS LKLSTGNEEE 360 DRSNNNGGGG GNSNNGREQ

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MDLQLKQWRN QTESEEQQPS AAKIPKHVFD QIQSQAALPL FAPEPNSSKL SSLSGLSPDS  60
SSRFPKMGSF FSWAQWQELE LQALIYRYML AGAAVPQELL LPIKKSLLHL SPSYFLHHPL  120
QHLPHYQPAW YLGRAAMDPE PGRCRRTDGK KWRCSRDVFA GHKYCERHMH RGRNRSRKPV  180
EIPTPTQTQT TPTPTNLNHT TNSASNQTRS SFDFGGDGVN VGDGQGSSFF FSGSSNSSSD  240
LLHLSQRDPF VKADPFMSHI FLQKMSEIMS CGFCNSCSEM KQGSNNNNKR SYETHGGFGD  300
NRSDNGHILR HFFDDWPRSS LQEADTTSSP MSSATCLSIS MPGNSSSDVS LKLSTGNEEE  360
DRSNNNGGGG GNSNNGREQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA60G00152

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010509475.1	1e-166	PREDICTED: growth-regulating factor 3
Swissprot	Q8L8A7	1e-113	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A087H2J0	1e-158	A0A087H2J0_ARAAL; Uncharacterized protein
STRING	XP_010509475.1	1e-166	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	2e-76	growth-regulating factor 3

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]