PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00027
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 280aa    MW: 30649.8 Da    PI: 9.0786
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00027genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.2e-391473362
      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  AA61G00027 14 ESALKCPRCNSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 73
                7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-34171IPR003851Zinc finger, Dof-type
PfamPF027011.5E-321571IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6461771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVERARIAKI PLPESALKCP RCNSTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV  60
PVGGGCRRNK RSKSNGAKSK STLTVSQGEN QISQLSSLPS YSSNPNKFLD YTQIPSFTSN  120
SQILPLGDYN TNNIGLDFGA IQLSNGVNGS SSTSGSILDP WRSVSSLQQI QQNPFLINNS  180
GLDQSSNVLY PLLEGTKPLM DMDSREGGTK SSNVKAEACD QDCGRDQDGV NNVSRNFLGN  240
MNINSSENNE YMTSWGGSNN NISSSWTGFN SNNSTGHVSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00027
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936538e-59AB493653.1 Arabidopsis thaliana At3g55370 mRNA for hypothetical protein, partial cds, clone: RAAt3g55370.
GenBankAF1558188e-59AF155818.1 Arabidopsis thaliana zinc finger protein OBP3 mRNA, complete cds.
GenBankAK2214028e-59AK221402.1 Arabidopsis thaliana mRNA for zinc finger protein OBP3, complete cds, clone: RAFL25-48-C17.
GenBankAL1329758e-59AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.
GenBankBT0330288e-59BT033028.1 Arabidopsis thaliana unknown protein (At3g55370) mRNA, complete cds.
GenBankCP0026868e-59CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882421.11e-124dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U11e-116DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLD7LV361e-122D7LV36_ARALL; Obf-binding protein 3
STRINGfgenesh2_kg.5__1952__AT3G55370.21e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-102OBF-binding protein 3