PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00131
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 185aa    MW: 20610.3 Da    PI: 8.9694
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00131genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.96.2e-3091144155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av++L G+++A+Pkti+ lm+v+gLt+e+v+SHLQkYRl
  AA61G00131  91 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMLLMSVDGLTRENVASHLQKYRL 144
                 59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-1988148IPR009057Homeodomain-like
PROSITE profilePS5129410.22388147IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-3090149IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-2492144IPR006447Myb domain, plants
PfamPF002493.3E-794143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRDDNPNWFS NWEEELPSPE ELIPLSQTLI SPHLALAFEI GTPNHHLSKN TSSIYHQRLQ  60
STTPSPKSAD FAVDSTDLVT GGEEQARTLK RPRLVWTPQL HKRFVDAVAH LGIKNAVPKT  120
IMLLMSVDGL TRENVASHLQ KYRLYLRRMQ GFSGNGNGVV SDSSTDRLFA SSPVPAHFLS  180
PVKAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-3291147157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00131
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181630.12e-81Homeodomain-like superfamily protein
RefseqXP_010552902.14e-81PREDICTED: transcription factor PCL1-like
RefseqXP_010552903.14e-81PREDICTED: transcription factor PCL1-like
SwissprotO222102e-82MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A178VYV14e-80A0A178VYV1_ARATH; MYBC1
STRINGXP_010552902.12e-80(Tarenaya hassleriana)
STRINGAT2G40970.17e-81(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40970.18e-78G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]