PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA61G00144

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 226aa MW: 25893.7 Da PI: 9.45

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA61G00144	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.7e-13	50	96	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+e+ErrRR+riNs f++Lr+ll ++ K +Ka+ L k+++ +k+Lq AA61G00144 50 NHKEAERRRRQRINSHFNNLRSLLSSP-----SKTDKATLLGKVIQRVKDLQ 96 8***********************9.....7***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.748	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-13	49	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-9	50	98	No hit	No description
SuperFamily	SSF47459	7.85E-14	50	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-11	50	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-12	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	4.7E-5	131	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
METPTPDSML YSFFTSNNYI STTKTSSYYP VAIKETTTSH DIKTRASLNN HKEAERRRRQ 60 RINSHFNNLR SLLSSPSKTD KATLLGKVIQ RVKDLQQQTL EISETLPSET DEISVHNFTN 120 VSNNVGRIIL KVSICCVDRS NLLEDLMKIL KSLKMETIRA EISTIGARIR NVLFVEVEEE 180 NGVEFVKILE NALKSLVDRS TKSLVECVFS GERLKRRRDI EHIMMV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA61G00144

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402950.1	2e-73	putative transcription factor bHLH107
Swissprot	Q9LET0	2e-68	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	A0A3P5YP25	6e-72	A0A3P5YP25_BRACM; Uncharacterized protein
TrEMBL	V4LWX3	4e-72	V4LWX3_EUTSA; Uncharacterized protein
STRING	XP_006402950.1	7e-73	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3642	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]