PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00202
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 255aa    MW: 28378.4 Da    PI: 8.3664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00202genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-06219241223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+++s++ +Hi + H
  AA61G00202 219 VCPKCSRGFRDSSEMLKHIDKdH 241
                 6******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.45E-12457No hitNo description
PROSITE profilePS510397.6591059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.2E-101150IPR000058Zinc finger, AN1-type
PfamPF014282.5E-131349IPR000058Zinc finger, AN1-type
SMARTSM001544.9E-61352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.2E-991149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.19E-993145No hitNo description
PROSITE profilePS510398.04598145IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0074101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.494218246IPR007087Zinc finger, C2H2
PROSITE patternPS000280220241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDICKQ IDFLPFTCDR CLEVFCLDHR SYINHSCPKG NRGDVTVVIC  60
PLCAKGVRLN PEEDPNITWE KHVNTDCDPS NYEKAVKKKK CPVPRCKELL TFSNTIKCRD  120
CTIDHCLKHR FGPDHSCPGP KKQESSFPFM GFLNTNGKEV TRSKSSSTST WASLLASAEA  180
SFSKLGNDIS QKLQFSSGSD GNLEEKNGKQ SCGKSMVNVC PKCSRGFRDS SEMLKHIDKD  240
HRGSSKAIEK KAHIL
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319783.11e-148zinc finger (C2H2 type, AN1-like) family protein
RefseqNP_191307.11e-148zinc finger (C2H2 type, AN1-like) family protein
RefseqXP_020881486.11e-148zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_020881487.11e-148zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-149SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A178VKM11e-143A0A178VKM1_ARATH; Uncharacterized protein
TrEMBLD7LVT61e-147D7LVT6_ARALL; Uncharacterized protein
STRINGBostr.20903s0001.1.p1e-148(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]