PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00221
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 377aa    MW: 41415.1 Da    PI: 5.7663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00221genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09207254455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  AA61G00221 207 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 254
                 8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15201272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-8201258No hitNo description
Gene3DG3DSA:4.10.280.103.7E-15203271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDLTGGFGGR SGSGGLCREA TGLESLHLGD EFRQLVTLPS ENAGSFTALL ELPAPQALEL  60
LHFTDSSSSQ AVVTGVGEDI APPLHSFGTL TFPSNPVLME RAARFSVVAT EQNGNVSGDT  120
TTSSVPSNSS ANLERVKTEP AETDSSQRLV SDLAVENQSQ NQKNRSSKRK ELEKKVKSST  180
KKIKNSEEAE KLPYVHVRAR RGQATDSHSL AERARREKIN ARMKLLQELV PGCDKIQGTA  240
LVLDEIINHV QSLQRQVEML SMRLAAVNPR IDFNLDSILA SENGSLIDGS FNGTPMQLPW  300
PHQVIENEHS FHHRQPQTQP PPPPPPQQWP FEGLQQTVWG REDDEQNGND HNNNFIASEN  360
LMVSSSSLHP NQVKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850745.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y30.0A0A178V8Y3_ARATH; Uncharacterized protein
STRINGXP_006402839.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-179bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]