PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00234
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 684aa    MW: 76912.3 Da    PI: 8.1934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00234genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-121366148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++ W+t E++ll++av+++G ++W++++ +++       ++t+ +c++++++++
       AA61G00234 13 KQTWSTLEELLLACAVHRYGIDSWDSVSVEIQkhnsalRTLTASDCRHKYHDLK 66
                     789***********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-51267IPR009057Homeodomain-like
SMARTSM007171.9E-71268IPR001005SANT/Myb domain
PROSITE profilePS500906.261366IPR017877Myb-like domain
SuperFamilySSF466895.53E-61368IPR009057Homeodomain-like
PfamPF002493.3E-111366IPR001005SANT/Myb domain
CDDcd001672.76E-51566No hitNo description
SMARTSM002971.3E-15304413IPR001487Bromodomain
SuperFamilySSF473706.67E-14307414IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.0E-12314411IPR001487Bromodomain
PfamPF004398.7E-11322397IPR001487Bromodomain
CDDcd043692.86E-14323408No hitNo description
PROSITE profilePS5001412.802323394IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAKPENEEHY PEKQTWSTLE ELLLACAVHR YGIDSWDSVS VEIQKHNSAL RTLTASDCRH  60
KYHDLKRRFS WKLASSGSVE GETGDEISDV PWLEELRKLR VDELRQEVER YDLSISSLQL  120
KVKRLEEERE KSIKETDTET ENSDLDKMVE TMKESHREPE NNLGKPLAKP PNQSVESNSP  180
DPKDNSPGTR SENANRDVKI GEPVDEKPNR SSDGDGDGED TKPVREDSCR GSCESVAKES  240
AENSDRVDPV RRERNDSPEF IESMAESKGE EEAKETSDVQ SSASLPRKET VEQDEPDNED  300
QSPTVKWIHV ESQPLIDFIE ILHSNPIGSH FSRRLESQET TEYDKIIRQH IDTEMIRNRI  360
EAGYYKSSTR NFLRDLLLLI NNARVFYGER SSEFKSLEQL NQLVKKQLTF KIPKPKEESL  420
VTTKEVTVSS PTLSLKPKMS VPIIACRKRS SLAVRSSMSG TESHKKKMRI IPIVDVKQVT  480
KKEEEEKEEA DEEEEDEISD KDDELLISKK NTRSSRTSST AKKVANRNVK NRDSSSNPGQ  540
SSKVRSSNDS SESKKAQQEK KGNTNISSKR QSAVSFLKRM KGASSSKTVV ETTKSNSATD  600
SKRGTEQKKN NSKNDKIDTG KPPATQKRAT GKKPTNDKGS PAKKNTSIAT KRGAAASSSP  660
MVGKKVKEAS EKEAASSARP KKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878180.20.0uncharacterized protein LOC9312517 isoform X2
TrEMBLD7LVY60.0D7LVY6_ARALL; Predicted protein
TrEMBLV4LP560.0V4LP56_EUTSA; Uncharacterized protein
STRINGBostr.20903s0049.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein