PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00283
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 245aa    MW: 28091.8 Da    PI: 10.1502
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00283genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.32.2e-1425123186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +Li+a      +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +s   s +++f++l+
  AA61G00283  25 CWSEDATFTLIQAWGHCYIELNRGNLRQKHWQEVADAVndrhfnaghnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNSAYISPWSFFSSLD 123
                 7************************************************997777789*************************99999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2323125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDTVNNSFSP GSSRPSSSTL SREDCWSEDA TFTLIQAWGH CYIELNRGNL RQKHWQEVAD  60
AVNDRHFNAG HNVSAAKSQP YRTDVQCKNR IDTLKKKYKV EKARVSESNS AYISPWSFFS  120
SLDDLLRESF PTSSTPDSTD NQRLTLPMAI VPVPVAPRSA IPRRPATAPG FMPIGGYKEV  180
AKAIEKLGQI YERVEERKRK EMMDLEKQRM RFAKELEYNR MKLFTEMQAH LHKRRRTTNS  240
KGSTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001326954.11e-134sequence-specific DNA binding transcription factor
TrEMBLA0A1J3DXM41e-138A0A1J3DXM4_NOCCA; Trihelix transcription factor ASIL2
STRINGBostr.20903s0103.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-109sequence-specific DNA binding transcription factors