PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA61G00332

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 254aa MW: 29278 Da PI: 6.5137

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA61G00332	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.5	1.3e-29	89	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p AA61G00332 89 FYNTYATKVGFVIRVSKLSRSRHDGTPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 176 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-27	89	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MMGIPLELEV TTVVNHNEIG ENSGQAMAEQ DENHNEIGEN SGQTMIVQDE NHKIDPDSIP 60 GDITDMVEAP AIEPFVGQEF DSEAAAHGFY NTYATKVGFV IRVSKLSRSR HDGTPIGRQL 120 VCNKEGYRLP SKRDKVIRQR AETRVGCRAM ILIRKENSGK WVITKFVKEH NHPLMPGRVR 180 RGCIYDQYPN EHDKIQELMQ QLAMEKKRAA TYKRHLEMLF EQIEQHNESL SKRIQHIVEN 240 VRDLEQRDHE QNQV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA61G00332

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002878273.1	1e-161	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Refseq	XP_020882000.1	1e-161	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
TrEMBL	A0A1J3FDP8	1e-165	A0A1J3FDP8_NOCCA; Protein FAR1-RELATED SEQUENCE 5
STRING	Bostr.20903s0171.1.p	1e-162	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-163	FAR1 family protein