PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA61G00372

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

SBP

Protein Properties

Length: 936aa MW: 106167 Da PI: 5.94

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA61G00372	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4.1e-42	124	200	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C adls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk + AA61G00372 124 ICQVENCGADLSKVKDYHRRHKVCEMHSKATSALVGGVMQRFCQQCSRFHGLQEFDEGKRSCRRRLAGHNKRRRKGN 200 5*************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	32.325	122	199	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.2E-33	123	186	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-39	124	203	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-31	125	198	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.3E-8	716	831	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.81E-9	731	832	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	10.524	738	792	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.23E-9	738	828	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence Send to blast
MEAHYELSRM DLKGLGKRSV EWDLNDWKWD GDLFIGRKLN HGVNETMSRQ FFPLGSNSSS 60 SCSEEVNVEV LEKKRRVIVL DEENLRENGE DDARRLALKL GGNGETMENC ERNGVKKSKI 120 GGAICQVENC GADLSKVKDY HRRHKVCEMH SKATSALVGG VMQRFCQQCS RFHGLQEFDE 180 GKRSCRRRLA GHNKRRRKGN PETVSNVNPL SNEQTSNYLL ITLLKILSNL HCMLSFNFME 240 ISISIRRFYR FLILFYVAAN QSDSIVDQDL LSHLLKSIVN QTGDQIGKSL VELLQGQASL 300 NNGNSGLVLV EETPREDLKH TSVNVPETTW QEVRIAEDKS EKRVKMNDFD LNDIYIDSDE 360 TTDVERSPLA TTNPATSSLD YHQDSHQFSP PQTSRNSDSA SDQSPSSSMG DAQSRTDRIV 420 FKLFGKEPND FPVVLRGQIL DWLAHSPTDM ESYIRPGCIV LTIYLRQTEA AWEETHEKSL 480 FRLLFQLLCD LGFGLKQLLD ISDDPLWTTG WIYLRVQNQL AFAFNGEVVL DTSLPLRNQD 540 YSEIISVRPL AVSAKERVEF TVKGINLRRP GTRLLCAVEG TYLNQEATDE LISKNDTLEE 600 KNEIEIVKFS CEIPIENGRG FMEIEDQSLS SSFFPFIVSE DKEVCSEIRL LETTLEFTGT 660 DSAKQAMDFI HELGWLLHRT QLKNTSNPNS DQFPLQRFKW LIEFSMDREW CAVFKKLLNL 720 LLEETPSPEA TVSELCLLHR AVRRNSKSLV QMLLRFKNSL FRPDAAGPAG LTPLHIAAGK 780 DGSEDVLDAL TEDPGLVGIE AWKSSKDSTG FTPEDYARLR GHFSYIHLVQ RKIKKKNVVE 840 DHVVVDVLED LGDLKVEKRS SAMEITTQSV LSNCKVCDRK MVYGRARRSV VYRPAMLSMV 900 AIAAVCVCVA LLFKSCPEVL YVFQPFRWEL LAYGTS

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence Send to blast

MEAHYELSRM DLKGLGKRSV EWDLNDWKWD GDLFIGRKLN HGVNETMSRQ FFPLGSNSSS  60
SCSEEVNVEV LEKKRRVIVL DEENLRENGE DDARRLALKL GGNGETMENC ERNGVKKSKI  120
GGAICQVENC GADLSKVKDY HRRHKVCEMH SKATSALVGG VMQRFCQQCS RFHGLQEFDE  180
GKRSCRRRLA GHNKRRRKGN PETVSNVNPL SNEQTSNYLL ITLLKILSNL HCMLSFNFME  240
ISISIRRFYR FLILFYVAAN QSDSIVDQDL LSHLLKSIVN QTGDQIGKSL VELLQGQASL  300
NNGNSGLVLV EETPREDLKH TSVNVPETTW QEVRIAEDKS EKRVKMNDFD LNDIYIDSDE  360
TTDVERSPLA TTNPATSSLD YHQDSHQFSP PQTSRNSDSA SDQSPSSSMG DAQSRTDRIV  420
FKLFGKEPND FPVVLRGQIL DWLAHSPTDM ESYIRPGCIV LTIYLRQTEA AWEETHEKSL  480
FRLLFQLLCD LGFGLKQLLD ISDDPLWTTG WIYLRVQNQL AFAFNGEVVL DTSLPLRNQD  540
YSEIISVRPL AVSAKERVEF TVKGINLRRP GTRLLCAVEG TYLNQEATDE LISKNDTLEE  600
KNEIEIVKFS CEIPIENGRG FMEIEDQSLS SSFFPFIVSE DKEVCSEIRL LETTLEFTGT  660
DSAKQAMDFI HELGWLLHRT QLKNTSNPNS DQFPLQRFKW LIEFSMDREW CAVFKKLLNL  720
LLEETPSPEA TVSELCLLHR AVRRNSKSLV QMLLRFKNSL FRPDAAGPAG LTPLHIAAGK  780
DGSEDVLDAL TEDPGLVGIE AWKSSKDSTG FTPEDYARLR GHFSYIHLVQ RKIKKKNVVE  840
DHVVVDVLED LGDLKVEKRS SAMEITTQSV LSNCKVCDRK MVYGRARRSV VYRPAMLSMV  900
AIAAVCVCVA LLFKSCPEVL YVFQPFRWEL LAYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-32	121	198	7	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00060	PBM	Transfer from AT3G60030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA61G00372

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_191562.1	0.0	squamosa promoter-binding protein-like 12
Refseq	XP_002878311.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_020880464.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_020880465.1	0.0	squamosa promoter-binding-like protein 12
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A1J3IQZ6	0.0	A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRING	AT3G60030.1	0.0	(Arabidopsis thaliana)
STRING	scaffold_503227.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]