PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA61G00437

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 245aa MW: 28290.8 Da PI: 8.8598

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA61G00437	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C ksF + L H+r+H AA61G00437 4 YKCRFCFKSFFNGRALGGHMRSH 26 9*********************9 PP
2	zf-C2H2	14.2	0.00013	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+F++ L H +H AA61G00437 153 FKCETCDKMFKSYQALGGHRASH 175 89***********9999998887 PP
3	zf-C2H2	13.3	0.00026	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H AA61G00437 196 HQCPICLRVFSSGQALGGHKRSH 218 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	0.0025	3	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.48E-8	3	26	No hit	No description
PROSITE profile	PS50157	9.889	4	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.044	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.48E-8	148	175	No hit	No description
Pfam	PF13912	6.0E-10	153	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	153	175	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	153	180	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	155	175	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.162	196	218	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.7E-12	196	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.073	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MERYKCRFCF KSFFNGRALG GHMRSHITNL HETKFNVAEA EQEQEHPSQL SDETESYPSS 60 SSTSSSSTEE GEITQNEFIK QPKIKNNQDF TYTNNSNETE FNQRFKKTRK LDSFQSSISD 120 TTTEEDLAFC LMMLSRDDHN KWKRKNKIIK GKFKCETCDK MFKSYQALGG HRASHKKNKT 180 DQIVITEEPK KIKKLHQCPI CLRVFSSGQA LGGHKRSHGI NQIESVNVNV KMIDLNLPAT 240 MEDFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA61G00437

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022570762.1	2e-71	zinc finger protein ZAT9-like
Swissprot	Q9M202	5e-71	ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBL	A0A078K114	6e-71	A0A078K114_BRANA; BnaCnng73530D protein
STRING	Bra007545.1-P	4e-70	(Brassica rapa)
STRING	Bo6g077190.1	4e-70	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-60	C2H2-like zinc finger protein