PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA61G00470

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 7004.23 Da PI: 10.8468

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA61G00470	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.1	1e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRrng+lKKA+ELSvLCd+eva+iifss+gklye+s+ AA61G00470 9 KRIENKISRQVTFSKRRNGLLKKAYELSVLCDVEVALIIFSSRGKLYEFSN 59 79***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.8E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.716	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-30	2	59	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.24E-36	2	59	No hit	No description
PRINTS	PR00404	6.9E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGRVELKR IENKISRQVT FSKRRNGLLK KAYELSVLCD VEVALIIFSS RGKLYEFSNV 60 G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-20	1	61	1	61	MEF2C
5f28_B	4e-20	1	61	1	61	MEF2C
5f28_C	4e-20	1	61	1	61	MEF2C
5f28_D	4e-20	1	61	1	61	MEF2C
6byy_A	4e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	4e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	4e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	4e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	5e-20	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA61G00470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC155641	1e-47	KC155641.1 Gossypium hirsutum MADS box protein MADS46 mRNA, complete cds.
GenBank	LN681932	1e-47	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-47	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007134933.1	2e-33	hypothetical protein PHAVU_010G087900g
Refseq	XP_020214835.1	2e-33	agamous-like MADS-box protein AGL6
Swissprot	P29386	5e-33	AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBL	A0A199UL70	3e-32	A0A199UL70_ANACO; MADS-box transcription factor 17
TrEMBL	C6T9C5	3e-32	C6T9C5_SOYBN; Uncharacterized protein
STRING	XP_007134933.1	6e-33	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	2e-35	AGAMOUS-like 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Dreni L,Zhang D Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes. J. Exp. Bot., 2016. 67(6): p. 1625-38 [PMID:26956504]