PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00489
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 301aa    MW: 34117.9 Da    PI: 4.7019
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00489genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17100151156
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 ++y+GVr+++ +g+++AeIrdp +   r r++lg+f taeeAa  +++a+  l+g+
  AA61G00489 100 KKYRGVRQRP-WGKFAAEIRDPAS---RSRIWLGTFVTAEEAAMVYDKAAIHLKGH 151
                 59********.**********843...4***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.60E-30100157No hitNo description
SMARTSM003809.0E-34101164IPR001471AP2/ERF domain
PROSITE profilePS5103221.417101158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-29101157IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-20101158IPR016177DNA-binding domain
PfamPF008474.0E-10101151IPR001471AP2/ERF domain
PRINTSPR003675.3E-10102113IPR001471AP2/ERF domain
PRINTSPR003675.3E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MERRTRRIKL TEHRTVTSVP IKPCVDSPRV VRITVTDPFA TDSSSDDENE PRVKRFVEEI  60
RFCEGESSFP AGNSGRRGRF GGRNHDCSIS AMAAVGEKPK KYRGVRQRPW GKFAAEIRDP  120
ASRSRIWLGT FVTAEEAAMV YDKAAIHLKG HNAQTNFLTP PPFKTQISAI KSTVTDFETA  180
SCCDSGKESS LRSPTSVLRF NVNEEVESRT ELENEPIQLS PEIKPTTTMD PYFLPEFCFS  240
GENFWDTEIA PEPLFLDEIE IENSLPNTKI SNEENGSDDF SFNLSEDFDS FSWDVDNFFE  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2198157262ATERF1
3gcc_A3e-2198157262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00489
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329595e-48AL132959.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16.
GenBankAY0889385e-48AY088938.1 Arabidopsis thaliana clone 100688 mRNA, complete sequence.
GenBankCP0026865e-48CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291551.11e-117ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-102CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A1J3CYF21e-125A0A1J3CYF2_NOCCA; Ethylene-responsive transcription factor CRF6
STRINGBostr.13158s0163.1.p1e-124(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-103cytokinin response factor 6