PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00546
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 208aa    MW: 25516 Da    PI: 5.3168
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00546genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.5e-171569256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++  +f+++q++ Le  Fek+  ++  ++  LAk+l+L+ rqV++WFqN+Ra++k
  AA61G00546 15 KNQKRFNEKQIKSLEMIFEKETRLDPMKKLMLAKELELQPRQVSIWFQNKRARWK 69
                66789*************************************************9 PP
2HD-ZIP_I/II104.96.2e-3416107293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +++r++++q+k+LE+ Fe+e++L+p +K  la+eL+lqprqv +WFqn+RAR+k+kq+Ek+++ L+++y++l ++ e ++ke++ L +el++
   AA61G00546  16 NQKRFNEKQIKSLEMIFEKETRLDPMKKLMLAKELELQPRQVSIWFQNKRARWKSKQIEKEFNILRDNYNHLLSQFEIMKKEKQILISELQR 107
                  689************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.4061171IPR001356Homeobox domain
SMARTSM003892.3E-141375IPR001356Homeobox domain
SuperFamilySSF466898.98E-161383IPR009057Homeodomain-like
PfamPF000461.0E-141569IPR001356Homeobox domain
CDDcd000861.22E-111572No hitNo description
Gene3DG3DSA:1.10.10.602.7E-171677IPR009057Homeodomain-like
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PfamPF021831.1E-1271112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEERDESKKR KIKNKNQKRF NEKQIKSLEM IFEKETRLDP MKKLMLAKEL ELQPRQVSIW  60
FQNKRARWKS KQIEKEFNIL RDNYNHLLSQ FEIMKKEKQI LISELQRLNE QIQKIPQEIA  120
KQVPLISNKT TDQESYKEIN QEIFRSIDDN NYNIKREYFG FKEEIDEEED LMNIMESTDS  180
CLTFRSDEDN VLLDQTSNNY CPWWEFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00546
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712527.13e-67homeobox-leucine zipper protein ATHB-7
SwissprotP468973e-64ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A078HUR38e-66A0A078HUR3_BRANA; BnaC04g00750D protein
STRINGBo4g007060.15e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-57homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]