PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00549
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 287aa    MW: 33082.4 Da    PI: 7.2168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00549genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12136186154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +r  h ++Er+RR+ +N+ ++ Lr llP++   + ++ + a+i+  A++Y+k L
  AA61G00549 136 QRIIHIAVERNRRRLMNDHINSLRALLPPS---YIQRGDQASIVGGAINYVKVL 186
                 57789*************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.41E-9134191No hitNo description
SuperFamilySSF474598.77E-16134210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.545135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12137202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-10141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MISLEVQAFA ETQSFIFEEE EEEEDLSLKD TIPFLQMLQN GDSSPFLTLL SLQSLNNPYD  60
LESYKVQDFH LETNQFYQRS VSMEGVNQGN MNPSSSYSPN SANSKRKRKT SQEMSQEKRK  120
RKRSKPIKNI EDMENQRIIH IAVERNRRRL MNDHINSLRA LLPPSYIQRG DQASIVGGAI  180
NYVKVLEQLI QSLESRKRMQ QMIQNHVNLK VQCQRKQGQL LKGIISLEAL RLTVLHLNIA  240
SSGHESVSYS FNLKIEDDCD LQSADEITAA AHRIFDVQRI DSRNEPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106122KRKTSQEMSQEKRKRKR
2118125RKRKRSKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880824.11e-111transcription factor bHLH67
SwissprotQ700E41e-103BH067_ARATH; Transcription factor bHLH67
TrEMBLD7LSR11e-110D7LSR1_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.5__2692__AT3G61950.11e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.12e-99bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]