PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA61G00561

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 394aa MW: 44621.4 Da PI: 4.6452

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA61G00561	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	206	250	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Err R+++N+++ +L++llP++ K + a+ L +A+eY+k Lq AA61G00561 206 RRVERRQRSDMNKKMRTLQDLLPNC-----DKEDNASLLDEAIEYMKTLQ 250 789*******************9.....799**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.872	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-7	205	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-14	206	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-8	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-14	206	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.36E-6	214	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MEDKLFGSFN NTYMTSPSST CRPKLKYDEE CMELVYENGQ ILAKGQRSNG SLQNHRMKSI 60 FDMYEIEYEE DFNQRIIHGV DGCIKNLGDT QVVPEAREKH DESMLIDTVE DSEMMIMDQK 120 NQENLKNMEF IPPDEQSEAG QCCFDSSSSL SFGDSTDLSN SSGRLTCDDD IEESMYISSV 180 RRRLNLSLDD ESDDSRPRVP AIKRKRRVER RQRSDMNKKM RTLQDLLPNC DKEDNASLLD 240 EAIEYMKTLQ FQVQMMTMRN RFVTPSTMLL PLDHYSQMGL APQSMPALVP GAGLSGISDS 300 PNMLRFCNHP GLIPMQYSSL FSPMESCAPQ AVPPLNVPPA ASPIQPPNTT SLSNLDKASN 360 QEMVDRSFEH LKMSEFSQSI PLIKLAVNNK AISR

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MEDKLFGSFN NTYMTSPSST CRPKLKYDEE CMELVYENGQ ILAKGQRSNG SLQNHRMKSI  60
FDMYEIEYEE DFNQRIIHGV DGCIKNLGDT QVVPEAREKH DESMLIDTVE DSEMMIMDQK  120
NQENLKNMEF IPPDEQSEAG QCCFDSSSSL SFGDSTDLSN SSGRLTCDDD IEESMYISSV  180
RRRLNLSLDD ESDDSRPRVP AIKRKRRVER RQRSDMNKKM RTLQDLLPNC DKEDNASLLD  240
EAIEYMKTLQ FQVQMMTMRN RFVTPSTMLL PLDHYSQMGL APQSMPALVP GAGLSGISDS  300
PNMLRFCNHP GLIPMQYSSL FSPMESCAPQ AVPPLNVPPA ASPIQPPNTT SLSNLDKASN  360
QEMVDRSFEH LKMSEFSQSI PLIKLAVNNK AISR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA61G00561

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876664.2	1e-100	LOW QUALITY PROTEIN: transcription factor PIF6
Swissprot	Q8L5W7	4e-98	PIF6_ARATH; Transcription factor PIF6
TrEMBL	C0SVF8	1e-102	C0SVF8_ARATH; Uncharacterized protein At3g62090 (Fragment)
STRING	Bostr.13158s0214.1.p	1e-102	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13423	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62090.2	7e-89	phytochrome interacting factor 3-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Adams E,Diaz C,Hong JP,Shin R 14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs. Int J Mol Sci, 2014. 15(12): p. 22801-14 [PMID:25501334] Galvão VC,Collani S,Horrer D,Schmid M Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana. Plant J., 2015. 84(5): p. 949-62 [PMID:26466761] Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery. ACS Nano, 2016. 10(1): p. 225-37 [PMID:26618393] Ochoa-Fernandez R, et al. Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol. Biol., 2016. 1408: p. 125-39 [PMID:26965120] Gangl R,Tenhaken R Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark. Front Plant Sci, 2016. 7: p. 1115 [PMID:27507985] Paik I,Kathare PK,Kim JI,Huq E Expanding Roles of PIFs in Signal Integration from Multiple Processes. Mol Plant, 2017. 10(8): p. 1035-1046 [PMID:28711729]