PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00689
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 313aa    MW: 34929.6 Da    PI: 7.7255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00689genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06326226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k+ lC+ffa  G C  Gd C F+H+
  AA61G00689  3 KRILCKFFAH-GACLKGDHCEFSHD 26
                889***6666.*************5 PP
2zf-CCCH25.81.9e-083453525
                --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                +C ++++ G+C+yG+rC++ H
  AA61G00689 34 ICTYYQK-GICSYGSRCRYEH 53
                7******.**********988 PP
3zf-CCCH192.5e-06132154326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+ +a+ G C++G+ C+ +Hg
  AA61G00689 132 QPICS-YAAAGDCPRGEECPHIHG 154
                 68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3892956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-43453IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-63453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.493129156IPR000571Zinc finger, CCCH-type
SMARTSM003560.051130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.3E-10182257IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.09E-13187262No hitNo description
CDDcd001626.66E-4197257No hitNo description
PROSITE profilePS5008912.416198256IPR001841Zinc finger, RING-type
PfamPF000973.8E-7198255IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.4E-7198255IPR001841Zinc finger, RING-type
PROSITE patternPS005180222231IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS501039.601285310IPR000571Zinc finger, CCCH-type
SMARTSM0035621285313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDH CEFSHDWKDP TNNICTYYQK GICSYGSRCR YEHIKASRPQ  60
PSASSSSGVA QSSPASDFNP LASASIPGVS TNDLSPVPSS SLKPAWNFDS IHDDSLDDVK  120
SINPGTTKPE EQPICSYAAA GDCPRGEECP HIHGNVCPTC GKRCLHPFRP KERDEHKKVC  180
EKKQQQLEAL KLSQEIECCV CLERVLSKPT PAERKFGLLT ECDHAFCISC IRNWRSSSPS  240
TGMDVNSTLR ACPICRKLSY FVVPSIIWFS TPEEKTEIMD NYREKLRSID CKHFNFGDGN  300
CPFGTSCFYK FAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876728.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLE0X9N50.0E0X9N5_ARATH; CCCH-type zinc finger protein C3H69
TrEMBLE0X9N60.0E0X9N6_ARATH; CCCH-type zinc finger protein C3H69
STRINGscaffold_503646.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-142C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]