PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA625G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 296aa    MW: 34331.4 Da    PI: 8.9439
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA625G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35321232102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++Lp++Fkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++i+
   AA625G00003  32 FLTKTYQLVDDPSTDHIVSWGDDHSTFIVWRPPEFARHLLPNFFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCEIH 119
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   AA625G00003 120 RRKT 123
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3724116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5828121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.48E-3429121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-193255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAMMMEKSYS YSDGERASVT VEGQGKTVPA PFLTKTYQLV DDPSTDHIVS WGDDHSTFIV  60
WRPPEFARHL LPNFFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEFFKRG EKHLLCEIHR  120
RKTSLLPQHS PFLTPLKEDF YWCDSSTTPS RTTNHYHSLD SRQQVIALTE DNERLRRTNT  180
LLISELTHMK KLYNDIIYFV QNHVKPVSPS SSIDYNNSNG HVLNSSPTSQ SSITLLEDDS  240
YNNHESNRNV RKTKLFGVSL PSSKKRSHRF SDQSSKTRLV LDNSELDLNL MTASTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222812517124Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263267KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA625G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891331.11e-146heat stress transcription factor B-4
SwissprotQ9C6351e-146HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD7KPW31e-145D7KPW3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3816__AT1G46264.11e-146(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-148heat shock transcription factor B4