PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA62G00060
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 146aa    MW: 16678.1 Da    PI: 8.7605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA62G00060genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000344769123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+k Fs+   L  H  +H
  AA62G00060 47 FECKTCNKKFSSFQALGGHRASH 69
                89**********99999998887 PP
2zf-C2H215.45.2e-0594116123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg++F +   L  H+r+H
  AA62G00060  94 HECSTCGQTFGTGQALGGHMRKH 116
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-114771IPR007087Zinc finger, C2H2
SMARTSM003550.114769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5124774IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-747116No hitNo description
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-480117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.4E-1194117IPR007087Zinc finger, C2H2
SMARTSM003550.02594116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24294121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MKRNMADDNE SFENFDIVES LMMLSKSLVI KQTDVIKSTR SISSYNFECK TCNKKFSSFQ  60
ALGGHRASHK KPKLTVDQED VKQHCIKNEK DMNHECSTCG QTFGTGQALG GHMRKHRTSM  120
KARQYVHVMP MLHLDLNLTP LENDLV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA62G00060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588473.13e-59PREDICTED: zinc finger protein ZAT11-like
RefseqXP_013698875.13e-59zinc finger protein ZAT11-like
RefseqXP_013703544.13e-59zinc finger protein ZAT11-like
SwissprotQ9SLD47e-51ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A078F7G96e-58A0A078F7G9_BRANA; BnaC06g14860D protein
STRINGBo6g067580.11e-58(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-59C2H2 family protein