PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA63G00033
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 240aa    MW: 27200.6 Da    PI: 7.3506
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA63G00033genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.81.5e-141898286
    trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                W+++ + +Liea  ++  +l+rg+l++++W+ev++ +   +  g  ++ +qCk++++ l+k+yk +k+ +++       ++ +f++l+
  AA63G00033 18 WSEDATATLIEAWGDRYVKLNRGNLRQNDWKEVADSVnlsHGNGRPKTDVQCKNRIDTLKKKYKTEKAKSSS-------NWCFFNRLD 98
                *************************************9777777888******************9988775.......699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-241699No hitNo description
SMARTSM005950.002125106IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
METKPQSQRL PVGREDWWSE DATATLIEAW GDRYVKLNRG NLRQNDWKEV ADSVNLSHGN  60
GRPKTDVQCK NRIDTLKKKY KTEKAKSSSN WCFFNRLDFL IGPVLKKSST GVAKSALTGP  120
DLNPTGSKSS GSSLDDDDDD EDDDDVGDWG FVPRKHRRVE VVESSEGSAC RDLARAILKL  180
GEVYERIEST KQQMMIELEK QKMEAAKEIE LQRMNMLMEM QLELEKSKQR KTGAGSGKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA63G00033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407472.11e-127trihelix transcription factor ASIL2
TrEMBLE4MYF41e-125E4MYF4_EUTHA; mRNA, clone: RTFL01-52-B11
TrEMBLV4LEM31e-125V4LEM3_EUTSA; Uncharacterized protein
STRINGXP_006407472.11e-126(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.13e-99sequence-specific DNA binding transcription factors