PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA63G00034

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 159aa MW: 17662.2 Da PI: 7.0961

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA63G00034	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.5	3.1e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++ C++apyf a++p +fa vhk+FGasnv+kll+++pee+r+++++sl+yeAe+r++dPvyG++g+i +lq+++ +l+++la++++ AA63G00034 11 SCAACKLLKRRCTPTCIFAPYFRANDPITFAKVHKVFGASNVSKLLSEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGTIASLQKKMLELQHDLAVARS 109 6**********************************************************************************************9987 PP DUF260 100 e 100 + AA63G00034 110 R 110 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.038	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRANDPITF AKVHKVFGAS NVSKLLSEVP 60 EEQRQETVNS LAYEAEVRLK DPVYGCIGTI ASLQKKMLEL QHDLAVARSR LAHSGVNNHH 120 VSALDDSAVL DLVPYSDLMF LDGFSLDAYL YDFGQPPFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	6	111	6	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	6	111	6	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA63G00034

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407473.1	1e-100	LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-99	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A087H8P0	1e-100	A0A087H8P0_ARAAL; Uncharacterized protein
STRING	A0A087H8P0	1e-101	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-102	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]