PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA65G00070

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 377aa MW: 42507.9 Da PI: 6.6998

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA65G00070	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.8e-07	202	243	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L+el+P + +k Ka +L + ++Y++sLq AA65G00070 202 KVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 243 67*****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.1E-13	181	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.036	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-4	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-13	199	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-7	202	247	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGGDNNGDEI GFKHGDETEI SRLGITSMPL YTKPDSFFSS ADWDPLVSNS HYTSLVTNCF 60 PHFTPVSGSS YCEIPANLLP FRPGESHEAH QISDDGVLST SQSRKRKQLE AASVSTLQWN 120 KKAVDEIQED YTEDQSEKNL KTEQSKERKE TMNKESSQSG NEAPKENYIH MRARRGQATN 180 SHSLAERLLI LRNLLFRLLF SKVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ 240 SLQQQVEFLS MKLATVNPEL DKIIAKDLLQ SRDRNTSTLG LTPGLNPFTI FQGIIPNIST 300 TTNPQYNSLH QASNQLREEK HCHFGHQCCF FLHISCLILQ TTVDSELHNL YQMGFVSNPS 360 TVSTFSPNAL SGLKPEL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGGDNNGDEI GFKHGDETEI SRLGITSMPL YTKPDSFFSS ADWDPLVSNS HYTSLVTNCF  60
PHFTPVSGSS YCEIPANLLP FRPGESHEAH QISDDGVLST SQSRKRKQLE AASVSTLQWN  120
KKAVDEIQED YTEDQSEKNL KTEQSKERKE TMNKESSQSG NEAPKENYIH MRARRGQATN  180
SHSLAERLLI LRNLLFRLLF SKVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ  240
SLQQQVEFLS MKLATVNPEL DKIIAKDLLQ SRDRNTSTLG LTPGLNPFTI FQGIIPNIST  300
TTNPQYNSLH QASNQLREEK HCHFGHQCCF FLHISCLILQ TTVDSELHNL YQMGFVSNPS  360
TVSTFSPNAL SGLKPEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	107	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA65G00070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221806	3e-56	AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBank	AK229309	3e-56	AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBank	BT012655	3e-56	BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417495.1	1e-146	transcription factor bHLH74
Swissprot	Q6NKN9	1e-138	BH074_ARATH; Transcription factor bHLH74
TrEMBL	V4L7V0	1e-145	V4L7V0_EUTSA; Uncharacterized protein
STRING	XP_006417495.1	1e-146	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-137	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]