PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00303
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 188aa    MW: 21336.8 Da    PI: 5.8593
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00303genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-162978255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r++    +Wv+e+r+p++   ++r++lg++ tae+Aa+a++ a+++++g
  AA65G00303 29 IYRGIRQRN-GDKWVCEVREPTN---QRRIWLGTYPTAEMAARAHDVAALAFRG 78
                69****999.9******999854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-122878IPR001471AP2/ERF domain
CDDcd000184.95E-292888No hitNo description
Gene3DG3DSA:3.30.730.101.0E-292988IPR001471AP2/ERF domain
PROSITE profilePS5103222.0362986IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202988IPR016177DNA-binding domain
SMARTSM003802.1E-272992IPR001471AP2/ERF domain
PRINTSPR003678.2E-83041IPR001471AP2/ERF domain
PRINTSPR003678.2E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDNNEIILAE MRPKKKAGRR IFKETRHPIY RGIRQRNGDK WVCEVREPTN QRRIWLGTYP  60
TAEMAARAHD VAALAFRGRS ACLNFADSSW RLPVPDSNDF DSIRRVAAEA AEIFRPSEFS  120
TGITVLPSSS EVQVPSGSGR SGSGLAEEPL MSPPRNDYNN YYMDLSNGYM EEDICYGNGY  180
EDVSLWNY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00104PBMTransfer from AT1G63030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473531.13e-89PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ64e-90DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLD7KU342e-87D7KU34_ARALL; Uncharacterized protein
STRINGBostr.22157s0019.1.p3e-90(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-92ERF family protein