PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00345
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 379aa    MW: 44199.7 Da    PI: 8.3407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00345genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix864.6e-2780161286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W ++e++ Li +rr m+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++    + +++y++++e
  AA65G00345  80 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---GTAKMSYYKEIE 161
                 ********************************************************************95...555899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-470141IPR009057Homeodomain-like
PROSITE profilePS500907.97972136IPR017877Myb-like domain
SMARTSM007170.009676138IPR001005SANT/Myb domain
CDDcd122032.39E-2878143No hitNo description
PfamPF138371.7E-2079162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MFVSDKPRPT DFYKDDTNST ATERDMIIDV TANGDLQPHH HHHHHPHHHQ IHQSQQQMIL  60
GESSGEDHEV KAPKKRAETW VQDETRSLIM FRRGMDGLFN TSKSNKHLWE QISAKMREKG  120
FDRSPTMCTD KWRNLLKEFK KAKHHDRGNG TAKMSYYKEI EDILRERSKK VTQYKSPTPT  180
AKVDSFLQFT DKANGRPALN LERRLDHDGH PLAITTVDAS TASGVPPWNW RETPGNGKYL  240
RKPPFNGRVI TVKFGDYTRR IGIDGTTEAI KEAIRSAFGF RTRRAFWLED EEQVLRCLDR  300
DMPLGNYSLH VDEGLAIKLC HYDESEQIPV QLEEIFYTEE EYRDFLGRRG WTCLQVFDGF  360
RNIRNMDDLQ PGALYRGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-5574159186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00345
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009039.10.0trihelix transcription factor GT-1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLV4KVV00.0V4KVV0_EUTSA; Uncharacterized protein
STRINGXP_006417121.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]