PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA663G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 557aa    MW: 62566 Da    PI: 10.2543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA663G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07454503147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      AA663G00001 454 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 503
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.032449508IPR017930Myb domain
SMARTSM007177.0E-7453506IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-10454504IPR009057Homeodomain-like
CDDcd116602.78E-16455505No hitNo description
SuperFamilySSF466891.89E-15455536IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYEVPVTP RAARSPRKSA FKKKSQSSFD LLAAVAGKLL LESGNSSSSS  60
NNASANEDHL SDVVKRESVC GEERVREETC DHENAERRFF VSEILPKSHE IQERSPSPPK  120
DFQFGSTSVI TSDSSDKFRP EGTKIEDGSL GSVYKKPVFR NPLVCSDDDE NFSARTNVSC  180
STKSFRSNLC NGDRRIRKIL ASKYSKVLPK VKDTKVMTSS DLKSDYYSKK HCLRSLKSER  240
NYPIKKRRYF DHYTESKSEE NVKNEDLSGS SHKVKVGIKS FKVPELFIEI PETATVGSLK  300
RTVLEAVTTI LGGGLRVGVL VHGKKVRDDK QMLLQSGISL DSLSDSLGFC LEPNPQQSTK  360
PFPPEDSNFI RSCNVPQNLT RRVMSPWKHT NPKPSDSVES DLDSKPSGSN TVISRANAVY  420
SRALVPVPAF HAQALSIVPP RKTKRSEVVQ RRIRRPFSVA EVEALVQAVE RLGTGRWRDV  480
KLRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQGK  540
HQLLLQGPMK IETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-574415514111Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA663G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008210.10.0telomere repeat-binding protein 5 isoform X2
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLR0GKR50.0R0GKR5_9BRAS; Uncharacterized protein
STRINGCagra.1671s0374.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2