PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA69G00052
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 146aa    MW: 16945.3 Da    PI: 6.0829
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA69G00052genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-112761898
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +p +fa+ hg+k   sk +t++++ g   ++++  +   +++++++GW eF++a+ + eg  ++F+++g+s+f  +v +f+
  AA69G00052  2 IPPRFAKLHGSK--LSKFVTFKTPIGLNRSIQI--KHICEEIWFQEGWIEFAEAHSIAEGHLLMFEFNGKSTF--HVVIFD 76
                9*****999977..8999********8888888..779999*************************9998888..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.871178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-15276IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-9276IPR003340B3 DNA binding domain
CDDcd100171.05E-9276No hitNo description
SMARTSM010190.0037278IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-15277IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
KIPPRFAKLH GSKLSKFVTF KTPIGLNRSI QIKHICEEIW FQEGWIEFAE AHSIAEGHLL  60
MFEFNGKSTF HVVIFDVTAF EIKYPFDEDK DVEIIEIMGG SDDSDHKPKK RTSDFGFHQI  120
LIDIDAMDSH EALKEDKRDF RGKQSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA69G00052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192068.13e-47AP2/B3-like transcriptional factor family protein
SwissprotQ9ZSH73e-48Y4158_ARATH; B3 domain-containing protein At4g01580
TrEMBLA0A1J3J1498e-44A0A1J3J149_NOCCA; B3 domain-containing protein (Fragment)
STRINGAT4G01580.11e-46(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-50B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]