PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00029
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 333aa    MW: 38805.5 Da    PI: 6.9528
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00029genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.7e-32261162101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+ye+++d++ +++isws+n++sf+v+++ ef +++Lpk+Fkh+nf+SF+RQLn+YgF+k+++e+         weF+++ F k++ +l+++i+
     AA6G00029  26 FITKIYEMVNDSSSDSIISWSQNNQSFIVKNPLEFCRDLLPKFFKHKNFSSFIRQLNTYGFRKSDSEK---------WEFTNEDFVKDQPNLMKNIH 113
                   9**************************************************************99988.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     AA6G00029 114 RQK 116
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3519110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-3221114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5222115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2926115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAIITGFGVS ISMDDKNGGS SSLPPFITKI YEMVNDSSSD SIISWSQNNQ SFIVKNPLEF  60
CRDLLPKFFK HKNFSSFIRQ LNTYGFRKSD SEKWEFTNED FVKDQPNLMK NIHRQKPVHS  120
HSLPNPQAQN PLTESERKMM KEQMENLKTE KENLLTELKN QEQEHKGYEF EVKTLKERLQ  180
HIKQRQKSMV SYISQVLEKP DLSQHFSTHY SRKRRLEDNQ TCVSLESSLT FWENLVADAY  240
DKSLQSSNLN LEVDESTNCV ESQSLSCPKS SRIDMNSEPV VMNKIGVNDG FWEQFLTENP  300
GSTEQQEVQS ARKDIGTRKG DKKMSDQRKY WWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-2221156129Heat shock factor protein 1
5d5v_B8e-2221156129Heat shock factor protein 1
5d5v_D8e-2221156129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00029
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518819.11e-141PREDICTED: heat stress transcription factor A-4a
SwissprotQ9FK721e-140HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A178UPK91e-138A0A178UPK9_ARATH; RHA1
STRINGXP_010518819.11e-141(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-123HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]