PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00064
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family BES1
Protein Properties Length: 676aa    MW: 75753.7 Da    PI: 5.5173
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00064genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822152.72.8e-47822281145
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslks 100
                gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw+v++DG+tyr++  p+      +++  +s+es+l+ss+  
  AA6G00064  82 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWTVDADGNTYRQSHLPN-----HVQFPARSVESPLSSSTLK 176
                6899********************************************************************9999.....6778888888888855555 PP

     DUF822 101 salaspvesysaspksssfpspssldsislasa.......asllpvlsvlsl 145
                +  ++ ++ +++ ++ ++  sp+slds+ +a++       +  +p++sv ++
  AA6G00064 177 NCAKAALDCQHSILRIDENFSPVSLDSVVIAENdpgsaiyTGASPITSVGCM 228
                556778999*********************9998887777677777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-4483213IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.65E-149246672IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.3E-156251673IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.4E-78256638IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48286300IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48307325IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48414436IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48487506IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48521537IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48538549IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48556579IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-48595617IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNTLNNNTTT MGPQDTIDPN SNPNPDPDQS IHQNQHHQPQ SRRPRGFAAA AASIGPAESD  60
VNNENSAGIG GGETSSGGGG GGGKGKRERE KEKERTKLRE RHRRAITSRM LAGLRQYGNF  120
PLPARADMND VIAALAREAG WTVDADGNTY RQSHLPNHVQ FPARSVESPL SSSTLKNCAK  180
AALDCQHSIL RIDENFSPVS LDSVVIAEND PGSAIYTGAS PITSVGCMET NQLIQDVHST  240
EPRNDFTGSF YVPVYAMLPV GIINNFGQLV DAEGVRQEIS YMKSLNVDGV VIDCWWGIVE  300
GWNPQKYVWS GYRELFNLIR DFKLKLQVVM AFHEYYGGNA SGNVMVPLPQ WVVEIGKDNP  360
DIYFTDREGR RNFECLNWSI DKERVYFDFM RSFRSEFDDL FEEGLIAAVE IGLGASGELK  420
YPSFPERLGW IYPGIGEFQC YDKYSQQNLL KEAKSRGFAI CGKGPENAGQ YNSRPHETGF  480
FQERGEYDSY YGRFFLNWYS QLLIGHADNV LSLATLAFED TKIIVKIPAI YWSYKTASHA  540
AELTAGYYNP SNRDGYTPVF ETLKKHSVTV KFICPGPQMP LPNEHEEALA DPEGLTWQVI  600
NAAWDKELLV GGENAVACFD REGSMRLVEL AKPRNHPDSY HFSFFTYRQP SPLLQGSTCF  660
PDLDYFIKRL HGEIQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wqs_A1e-11125167412447Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494622.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLD7MUR10.0D7MUR1_ARALL; Beta-amylase
STRINGXP_010494622.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]