PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00272
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family G2-like
Protein Properties Length: 74aa    MW: 8674.19 Da    PI: 10.4602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00272genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.1e-311566254
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
               prlrWt +LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ YR
  AA6G00272 15 PRLRWTVDLHNCFVQAVEQLGGENRATPKMVLQLMDVRGLTISHVKSHLQ-YR 66
               8************************************************9.66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-301170IPR009057Homeodomain-like
PROSITE profilePS5129410.5241170IPR017930Myb domain
SuperFamilySSF466895.73E-151371IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-231565IPR006447Myb domain, plants
PfamPF002491.8E-71664IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MKDPIVRPYV RSKIPRLRWT VDLHNCFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK  60
SHLQYRSMKQ EETI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-191669357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-191669357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-191669357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-191669357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-191669458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001329768.12e-39Myb-like DNA-binding domain protein
RefseqXP_006289552.22e-39transcription repressor KAN1 isoform X1
RefseqXP_023637166.12e-39protein PHOSPHATE STARVATION RESPONSE 3 isoform X2
SwissprotQ700D91e-25MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLR0HBQ02e-38R0HBQ0_9BRAS; Uncharacterized protein
STRINGBostr.7199s0006.1.p5e-39(Boechera stricta)
STRINGXP_006289552.13e-39(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-32G2-like family protein