PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA6G00322
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 355aa    MW: 41138.1 Da    PI: 9.009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA6G00322genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021113136123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y C+ C+++F +++ L +H r  H
  AA6G00322 113 YFCGVCDRRFYTNEKLIHHFRQiH 136
                78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.2E-535113IPR029060PIN domain-like
SuperFamilySSF576674.74E-5111140No hitNo description
PROSITE profilePS5015711.074113141IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
CDDcd061676.42E-13179265No hitNo description
PfamPF019366.7E-7185266IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.2E-5198266IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFSRLFKQNW RLKTYNTALN SINDFSSLNP KTIIRVAVFW DLDNKPPASF PPYDAAIKLR  60
TAAGSFGFVK LMVAYANRHA FTYVPLAVRE QRKERKLLNQ LENKGLVKPP EPYFCGVCDR  120
RFYTNEKLIH HFRQIHETEN QKRVRQIESA KGHRRVRLIA KYSMKMEKYK RAARNIMTPK  180
EGYGLADELK RAGFLVKMVN NKPEAADTAL KQHMRDLMDK REVECVVLVS DDSGFAEILW  240
EAKERCLRTV VIGDLNDGAL KRVADVAYSW KEVVMGKAKK EVEKVVGKWK DRDVLKTLEW  300
RYDSALEKTK DSCEIWDYEF DDDEIENGAE VDSATMADGG SWWEIDEEDT VKSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA6G00322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192961.10.0zinc finger (C2H2 type) family protein
TrEMBLA0A1J3JFS60.0A0A1J3JFS6_NOCCA; Uncharacterized protein
STRINGBostr.25463s0088.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein