PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA72G00006

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 138aa MW: 15552.7 Da PI: 8.6382

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA72G00006	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.2	1.2e-09	22	64	6	45
HHHHHHHHHHHHHHHHHHHHHHHHHHT...-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCd...aevaviifsstgk 45 k +r+v fskRr +++KK E+S C+ a vav+ ++ gk AA72G00006 22 KEQRYVAFSKRRPTLFKKVAEVSSTCEscrATVAVLTTAPCGK 64 789*******************987643338999998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-5	9	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.353	9	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-10	11	72	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-8	22	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MENKSAVKKT KQKIEIAARD TKEQRYVAFS KRRPTLFKKV AEVSSTCESC RATVAVLTTA 60 PCGKPESMHS LDSVNSSAFD IAKAYLEGIV PPPQSSEFWW KNSKFEEIED DSEKQNLKEH 120 LQQTISDVVA CLRKRGDL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA72G00006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6395	14	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27130.1	1e-19	AGAMOUS-like 39