PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA731G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 138aa    MW: 15676 Da    PI: 9.422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA731G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00137395123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ Cgk    k + ++H +++
  AA731G00002 73 FSCGRCGKALAVKGDWRTHEKNC 95
                 89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MFTQMHMWGH GSEFRKGPES LKGSTKASDI LRLPCYCCVE GCKNNINHPR SKPLKDFRTL  60
QTHYKRKHGS KAFSCGRCGK ALAVKGDWRT HEKNCGKLWY CSCGSDFKHK RSLKDHIISF  120
GKGHSPLLEE DTECVTGE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA731G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892452.17e-84zinc finger protein WIP3
SwissprotQ9SGD16e-83ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLD7KI092e-82D7KI09_ARALL; Zinc finger protein
STRINGfgenesh1_pg.C_scaffold_10006843e-83(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-85WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]